PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0029s0094.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 195aa    MW: 21876.2 Da    PI: 10.5746
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0029s0094.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-057292323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+k F r  nL+ H r H
  Kaladp0029s0094.1.p 72 CEVCNKGFQRDQNLQLHRRGH 92
                         *******************88 PP

2zf-C2H212.70.00037147169123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  ks+ k H + +
  Kaladp0029s0094.1.p 147 WKCDKCSKKYAVKSDWKAHSKIC 169
                          58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.47E-86992No hitNo description
Gene3DG3DSA:3.30.160.604.3E-66992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.137092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8457092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355110112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.47E-8142167No hitNo description
SMARTSM00355130147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSQGLSPVPS SILGFVGDQS KNPDSSNSPA TQPSASSSTL KRKRSLPGTP DPDSEVIALS  60
PTSLMATNRF LCEVCNKGFQ RDQNLQLHRR GHNLPWKLKQ RSNKEVVKKK VYICPEKSCV  120
HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVKS DWKAHSKICG KERNDTECML  180
RLCLAKKQFS RKEK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771226.11e-92PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_016446981.11e-92PREDICTED: protein indeterminate-domain 9-like
SwissprotQ944L35e-87IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLU5GCW45e-91U5GCW4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13130.11e-90(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.13e-76C2H2-like zinc finger protein